Release 4.1 (September 15, 2025)

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Summary of PolyA_DB version 4.1

HumanMouseRat
No. of 3'READS+ samples used 36445111*
No. of PAS-supporting reads in the 3'READS+ data 2,320,997,0562,322,684,59923616600*
No. of PAS identified by using 3'READS+ data (Max version) 1,429,8291,346,13561905*
No. of genes associated with PAS (Max version) 41,08135,88011,823
No. of mRNA genes associated with PAS (Max version) 18,71719,20811,097
No. of ncRNA genes associated with PAS (Max version) 22,36416,672726
No. of LR-RNA-seq samples used 227165-
No. of LR-RNA-seq reads used 413,432,074352,797,015-
No. of PAS-supporting reads in the LR-RNA-seq data 347,441,037318,856,685-
No. of PAS supported by both 3'READS+ and LR-RNA-seq (Main version) 281,091251,177-
No. of genes associated with PAS (Main version) 31,10132,125-
No. of mRNA genes associated with PAS (Main version) 17,62319,541-
No. of ncRNA genes associated with PAS (Main version) 13,47812,584-
* Data are from polyA_DB v3.2
Human LR-RNA-seq Data

ENCODE PacBioGETx ONT
No. of LR-RNA-seq samples used 13592
No. of LR-RNA-seq reads used 138,094,609 275,337,465
No. of PAS-supporting reads in the LR-RNA-seq data 126,822,990 220,618,047
Mouse LR-RNA-seq Data

ENOCOE ONTENCODE PacBioGENCODE_ontGENCOE_PacBio
No. of LR-RNA-seq samples used 151301010
No. of LR-RNA-seq reads used 76,750,150135,476,202108,199,68632,370,977
No. of PAS-supporting reads in the LR-RNA-seq data 65,614,080125,443,51197,704,05730,095,037
Please contact Shan Yu/Bin Tian for questions/comments/suggestions.